Scaffold Ga0210407_10000953

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000953
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29004
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F006229	Metagenome / Metatranscriptome	378	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y
F084509	Metagenome	112	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000095313	F009917	AGGA	MGSSGWTYVAVVFSLGAQLVVFLRWMHRRMRDDEIQRVFVRALALRHLPNIYRALNTIAEKQGIHLEEQPMVNYVDMRNGERNR
Ga0210407_1000095315	F007488	N/A	MKIRAYEESDLEALREIHARQGFGYAFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEDGSPRDKWQCLLGLHEATRRDALARGLEDVHAWLPPAIAQKFGKRLMRLGWVRDNEWTPYCKKLI
Ga0210407_1000095316	F106044	AGGAG	MPNLTSNATWDFNPGDTVTLNAAFTFDLQDPNDNQTVSGVLTTLQGRTPHVALTQTDNATISVVVTI
Ga0210407_1000095317	F000781	AGG	MLTVAQLAPLKDRDPYLYETLVKIVSAVNATSANAGVDPANPSPAPPAIAALKVQAANGWFDLAITDPAVTRPGLFYFVESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQFVGSLASAPVTFGSPAAAVVGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQTAL
Ga0210407_1000095319	F084509	GAGG	MPSYGNVLPPVSVGFGDSTAVIASTDVIFPAPFKSAQVALAPAFSSGKVRAAVEIVWSGAPGAISVQLQTADTDIDAAYIQEGAAITNVNSTNVTRAEFPDVVAKFARVLIATLPNNVTATAKISS
Ga0210407_1000095321	F006229	GGAG	MNKQSDVVSLVNISTQKWPPRHRTYFGSLTIQSPEAGTAYAVTPVRACTSLMDLGDKRTMEIRLSAQEIAEDLVREINGDSGEGSYHGVFVAVGPEPTKEELADARKKLAAFQTRLVETADLEWERSHNMMFITDLERRAARELGLEKPWLYDPKPMADCPACGEKIRPGVAVCRTCGAILDREKAAKFGLAEREEKGGEGANAQGERVAGKGKRG
Ga0210407_1000095325	F000739	GGA	MSTRKIQVWLKGMVAAGVSGAAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGAAAALINAVIGVAAYLQKSPLPEG
Ga0210407_1000095326	F000512	N/A	MIQVIRERHEAPENVARRLCLAGGMNRYGEANYRVVWGWNRLGWIGGKFEDRDARGDLIREVVELRREPKYPQVNRWHVERWVPAEAYGSPRAWYAQTLECADGKSVAALGPYPERGEYEHCFTLQGSRGEFVQLTPTIAEYVARAIEWARGRNPAGQRARLYEREAREERAYEEWAFEVMDDGAPAFGGVPIVTVG