Scaffold Ga0210407_10000721

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000721
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35103
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (77.14%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F001619	Metagenome / Metatranscriptome	662	Y
F002853	Metagenome / Metatranscriptome	526	Y
F006480	Metagenome / Metatranscriptome	372	Y
F021509	Metagenome / Metatranscriptome	218	Y
F105830	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000072110	F000703	GAG	MQIREYSEADLSALRAIHAAQGFDYPLPDLRNPLFVTKLVLAQDPTPANGRRGTIYRAPADAAHSDSDADGHATASRERILGAAFLRLTAEAYLLLDPRSGTPRERWQWLFALHAAAERDAWQRGLEDVHAWLPPPIAKTFGKRIACLGWLRDDAWTPYCKKLMEVK
Ga0210407_1000072111	F000781	GGA	MLTVAQLAPLKDRDPYLYETLVKIVSSVNATSQRAGVDPSTPAPAPTRIASVSVQASNGWFDISVTDPSAARPGLFYFAESDTTPAFSAPRVYFMGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPIAVAGGGAAGPAPLPSSGSGVFPNGVLRGGNGFGIHPGSRIVRQMLL
Ga0210407_1000072118	F000696	AGGA	MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDAVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVTAVTQPDTSLQVSITDATAPPNQLPTDLLVPLKIWERPNGSTDDFLEMVDLTRHGGLPSRVQDVTLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDLTDATSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLIVAAVRREQQSSHRRRPFSARSGYTPF
Ga0210407_1000072119	F000739	GGTGG	MNRFELWLKGILAAAISGAAGGVLTGFAAVGIDPQHFNLQSGSGATLRIGAAAALINAVIGVAAYLQKSPLPQD
Ga0210407_1000072121	F006480	N/A	MRRVFIGGIVLLLCGVISARSKSDPLVFVFLRVDREQDVAILRPMIAPDIGVQLDSGPREIKPGTVLRCKTSVREHDAIVETQIAKVSDLMLDCGDQKFVVKTVEFSPRAK
Ga0210407_1000072126	F001619	GAGG	MFDWLRKILQTRYVGLLEGEVARLRAENRALTNSLLGTAGFPPVEFPEEPKPQPLPRLRKRSWHQLQAWRETGANRDASANFEERTSERANGPVQHS
Ga0210407_1000072128	F021509	AGGAG	MTGVPISGPSVFEKLTNAIHLDYVLKIAGVGGFVWAFLASWHTLGFGVKASMLASVAAWLVGSRFSKIYR
Ga0210407_1000072130	F105830	GGAGG	VPDAERKLWRAVLGQAYEDAEGIPKADEIYEEQPLEASRARRYLRADSSFEAANLAMVCEFAGLPADRIISWARRSYPLAA
Ga0210407_100007218	F000624	AGGA	MSVSWFGILAAIISGAVQFVVFLRWLHRRMRNDEIVSAFVRDIAANHLPHIYTALHEIAKRQGIELPETPMVRFVDLNGHRHNK
Ga0210407_100007219	F002853	GGAGG	MGRGAQSQTRQLTDQERANMDALNQQFFGQQQQIGSTLLPQFQGILNNPGLSPADKAAVTGQSQGALSSAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQAQKNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANASRSNGGGFFSALGSGLGSALGALPGAFF