Scaffold Ga0210407_10000685

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000685
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36394
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (84.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002063	Metagenome / Metatranscriptome	597	Y
F003732	Metagenome / Metatranscriptome	471	Y
F007323	Metagenome / Metatranscriptome	353	Y
F052847	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000068512	F002063	GGAGG	MIAALELTILVLITIFAVAVAAGLHWLFLKAAFLLMRPATVQRTAVRTELARGTAQLARAYSAPR
Ga0210407_1000068513	F052847	AGAAGG	MVALRWLLMLVGAGVFGSAGALVAYDIYLSEQLRRLLSRNRTDKSGGDVRLRAARKPVRKGLTLRVNFLGGHAGQGFR
Ga0210407_1000068520	F003732	GGGGG	MSTKENLLFLWILVMVAFGLVFHHFWASTVYALGRAVAPTLISLLGLAKIAAGMYGVHLL
Ga0210407_100006859	F007323	N/A	MPRKLVWIDKQNLQGFGCSECNWMFKPSGAIVLESLEEMKQKYEAQRNKEFAAHVCVKHPRAARPKTE