Scaffold Ga0210407_10000615

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000615
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38728
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (75.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000552	Metagenome / Metatranscriptome	1033	Y
F007323	Metagenome / Metatranscriptome	353	Y
F097841	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000061523	F000552	GAGG	MGPMHRKLVWVERPNFQGWACSECAWVFNPSWPLVGNSIEEMKTKFGGERDNEFASHVCAEHPRATKDPH
Ga0210407_1000061533	F097841	N/A	MNENELNELAELLRELEETLLTLQATKNPEHRRLLVSKISRLFAEIELHPVEPK
Ga0210407_1000061535	F007323	N/A	MPRKLVWIESQTFEGFGCSECNWVFESPGALVGKSLDDVKQKYEVQRDKEFAAHVCVKPPRALRPKTE