NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000598

Scaffold Ga0210407_10000598


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000598 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39603
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (64.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007663Metagenome / Metatranscriptome347Y
F010184Metagenome / Metatranscriptome307Y
F010267Metagenome / Metatranscriptome306Y
F011251Metagenome / Metatranscriptome293Y
F014439Metagenome / Metatranscriptome263Y
F052829Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100005981F052829AGGAGMTMTRLSPPLDYLQAASRASLQSFELTRLNHAANLRQEIAALIDQWIQETSEAMLARWMLDHHKSLQSTAMTPAEVVRTLVDPASSLFPETESAMSDVVVPAPPRFADSRPAKHAIARKSQKPRQSATG
Ga0210407_1000059810F007663N/AMTSNPNFVKKQITVDTVSWTAVVAPVDCMAVSIKNSVLVDLRIRTDSGDATTQDTISAGSIETIAAPRHADGVQDGGSGTRFYAGDTIAYLQAASGTGPALVTFVR
Ga0210407_1000059813F010267GGAGGMANSSWHSIGQYAQLAGAGAFIAGAVLSLHHYAIGVCFIAGAAAYYAGKKLKVS
Ga0210407_1000059817F010184N/ALRLRGRYVRMLEEEVARLRGENRALVNSLLGTAGFPPISPEDDAKRGVVALPPVRRRTWSQIAREREFAAGRGAAEK
Ga0210407_1000059825F014439AGGAGMSVTLTLTDVDPGGTQVYAFGTVALSGNYPTGGDTVDWTQLVKQIAARGQIIDSSMNDPAFGPVQANFTVQGGTPNQYQMQQGAAANNWKMRGYTTGSAGAEFTGNAAYPSSATGDIITFSAQFRKLT
Ga0210407_1000059840F011251N/AMNLSWIVVAFPSCIQLFFFIRWLHRRTRDDEIRRAFVRDMAVNHLPHLYHALRQIATKLNIELEEPPPVQFLELNGRDRKRES
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