Scaffold Ga0210407

Basic Information
Taxon OID	3300020579 Open in IMG/M
Scaffold ID	Ga0210407_10000398 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020579 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50189
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (77.27%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

50189

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (77.27%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002025	Metagenome / Metatranscriptome	603	Y
F003174	Metagenome / Metatranscriptome	503	Y
F012133	Metagenome / Metatranscriptome	283	Y
F042798	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000039815	F042798	GGAG	MPSSTSDSKSKAIAYAKALAAICAGLILVFETASVYLLNHQSATYARISRQYDEALKMRPAGAGEPPSVLMVGNSLLLHGVRLDRLQELTSSRMRVYPIFLEATGYYDWLYALHGLFLRGARPQVVVVGVGVNYFLENGVRQDYAPMLFFNARDTLAVASDLKLDRTATSNLLLAHSSTFWDTRSAIRMQVLNHMVPHLEDLFSLVNQKPAVPEGGEFAEMSIPRLQRLRELCEANGAKLILLVPPTLASENAITQMAAAAQAAGVDVSVPIDPATLSAKFYQPDGMHLNRDGAVLFTSALAKDLPEKVMAHETLAAQK
Ga0210407_1000039833	F002025	GGAG	MNDLNNDVPKFVTKARASYLLGIPEGELRRISNETGLGHLERAGREEEMYFTYEELRRICMLAADEMQAGH
Ga0210407_1000039835	F012133	N/A	LPNGLFWIVKVPDSAVQISPDGNTLTIHLENVPVVDAVRFPPPVPSNFASDEVNISPYQLIRARTSFDITYTKTPGTARRIRPSTDDPLSPLNWAGKMWRATNSGSFSVAYDDGMFSASGTFGSSGNFGEMGTERNGFFVHHEEQDDDVEAGEQQLPLQPANMSQSAVTANTNKPVKFALLKGRVPVMVSH
Ga0210407_1000039836	F003174	AGGAGG	MRWRLGYLLLFFLAFSVPLKAQIEPISTLKVQPIPLPGGDIFPPYGLYNQFFPGPPNLNPPFDPMNADPQGITNFHGVTAMGYTGGFTRDQKFAVVTDIRVYQGDYIGGEIADPNTAGATKSARAHGTFVEI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210407_10000398

Overview

Ecosystem & Geography

Associated Families

Sequences