Scaffold Ga0210407

Basic Information
Taxon OID	3300020579 Open in IMG/M
Scaffold ID	Ga0210407_10000276 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020579 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	61910
Total Scaffold Genes	63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (71.43%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

61910

Total Scaffold Genes

63 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (71.43%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001463	Metagenome / Metatranscriptome	690	Y
F015633	Metagenome / Metatranscriptome	253	Y
F031163	Metagenome / Metatranscriptome	183	Y
F038452	Metagenome / Metatranscriptome	166	Y
F066203	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000027611	F015633	GGA	MTAKIRCPRVNIFRLASARAFAPALALLLLPCLASAQTATPPRVTWKSVEFAIVRFNDQAPNSWSIYHSEKKGILLVRLWKRFMLVKIADEEVYDIDPQKITVHGDSADWSYADIPDKPVEIVEWKERNIGSMQRITFRFGKNGHTLELQIPLGLNREPIY
Ga0210407_1000027628	F066203	N/A	MVEPLQLQTAAWALTTALELSLFVQVLRRKLGRLYPFFFAYLLSILLQSAGSAVLYGHSEIDKLTFWKIAWGMQGMVVLIRALTLVELNRKVLSPYVGIWALARGLLLGVAAAVIAYDLLLSKGDWQWLIMNGVRGLELAMAAVIVTMLLFARYYRIPVSPFQRALAVGLCLYSTFYVVNYSILEKVLRQYAVLWNFLGLFAFIASLLVWIGAAGRYTAVEEVAVPETIPAEVYGRISSEVNARLVLLNRQLIQILRLENRG
Ga0210407_1000027629	F038452	GGAG	MSLPVILLVLFAILLVGLLSWALRPPARSPRPPLDAFEALRQSRHSSRMSHILQALQPQDAEYLRSAGQPSLMQTLRRQRRVIALNYLQHLQEEFEMLLEISRALAVMSPELIAMEEMERWKLSLAFAANCAFLKWKLRLGLQPFSGFTLLSNIAASFARRLEAATTRIAESTVRSAEPSGPSHDNPGGF
Ga0210407_1000027656	F031163	AGGAGG	VPRFGISVRLRLSLAAFSCSIVLFPLCAQEPAQSIRMPGSHDFRTDWMPASTQSYISVRPRSDSITVEKPLWVSSPGTIQRMESAFYCNDTPFVDQVRLPLATLWHGRVKLVGFESDVTTANFVMGLPGQGALHNLSAFGGNGFLAVHTPPSDQLAGINMIFSWHGTDTESSDSSGLHGIEHLVHASRGFLQFRGGRSDSSSAALR
Ga0210407_1000027657	F001463	GAGG	MFLRMEDRMMLNGNKKPPLIEDLRAHSQEQVAELRLLLDAGLTGRPDPRRPGFFELDGVANVYYVFRYPAGHKVLLLAAWQREADPVAELVAYSCPAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210407_10000276

Overview

Ecosystem & Geography

Associated Families

Sequences