Scaffold Ga0210407_10000264

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000264
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63310
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000828	Metagenome / Metatranscriptome	872	Y
F006876	Metagenome / Metatranscriptome	363	Y
F016510	Metagenome / Metatranscriptome	246	Y
F018546	Metagenome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000026418	F018546	N/A	MAIYAVLLESGAGGGRYYDLLWIAVFGFATLNILSLVARRFEPGRSSMTFGEMLAIATAVICALMLGWELLFMFHVLPIRIEPR
Ga0210407_1000026430	F000828	GGAGG	MSIFDEKYRVVAIDGDRLVVRGVRSGEVLTIVNPEPEIPITAADYPPGRLIALTDPSTLPLN
Ga0210407_1000026431	F016510	GAG	VKAKELTLKQIVSVPCPTCGAEIKEPCELHTGAQRSEPHRDRKLSAADAVEKQSGKR
Ga0210407_1000026456	F006876	GGAGG	MTELETKINNILEEHQHESGLHMIGGRRRLIDRLVQFYEEQSFESGRQTGPQSSSRAS