Scaffold Ga0210407

Basic Information
Taxon OID	3300020579 Open in IMG/M
Scaffold ID	Ga0210407_10000108 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020579 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	106220
Total Scaffold Genes	104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	84 (80.77%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

106220

Total Scaffold Genes

104 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

84 (80.77%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001909	Metagenome / Metatranscriptome	619	Y
F044182	Metagenome / Metatranscriptome	155	Y
F046237	Metagenome / Metatranscriptome	151	Y
F053821	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000010833	F053821	GGA	MIASSKNHPKLLSAKAKLSLLRIQPDYPTQRQPLPVILRLSDKDSRRTSTASSSPNSATSYKLSRNPFLYLLYFLYLLYLPTPASAQNFDKPLTNIDEEVTAFAYAPNGNIVFSVRRMFKTKKYDLQRDDIWLLDSSGKRKRLLEGQKFTREDKLFTYQVESFTWSPNAHIIAVQLFTTTMDPDAGARQDAPALLLLDDSGRELHPSGKDPLILEARNPLWLRDNQTLVYLSNEDTPQGLYSMQYLNVSSGPAGKVFEGRTFEGASRISGSNAALAVERNRNWDGPARLQRLDLLSQDDREVATLDAYSGGILVSPSGTRVAYFLDKEVLEIRDLTVPVRIARLRIGLGVLHWSADESRLYLKRTVEKKSADLVTFQVPELRAYPAHSEVPVLEPEPRMLLHGLTIREYSLSPDGRFLAVVLPGKRNLQIFGF
Ga0210407_1000010845	F044182	AGGAG	MSTAGFQVLFLGELPFWLKISQSIVEAPSSSFQIHRSPSLRETLRRLDSEQWHALLLDLSHPSAQELLAARKLHDGLGSVPVVALLPIADPQFLEAAAIAGAASSLVLADLNVASLQRALVTAIDTETLRNSSRKVSSMSFSFEHPSSDHLPASKLEAISHAVNNLLCVINANADILTDQLDPAHNAIRSLTQIKKATKNASDLIRLLKTP
Ga0210407_1000010860	F046237	GGAGG	MEKKIVRFMLISAAAMLALPLAFADSAYPKTASCPIDAGTAHATGKTRKAMQAACTDIEYKHKGTDYSDPRHPQKFNHLFWITHCTE
Ga0210407_1000010863	F001909	N/A	MGRSGTEERRRKGRLKLPRVVRVRPSEPGPNEFDEVLPTQNAAFDSVYFVSKNRKYKEGLRVFVTYPYSDEPGSINREFLGKVARIEELDHGRRGIAIQMLMPLYVGAKETLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210407_10000108

Overview

Ecosystem & Geography

Associated Families

Sequences