NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000108

Scaffold Ga0210407_10000108


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000108 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106220
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (80.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001909Metagenome / Metatranscriptome619Y
F044182Metagenome / Metatranscriptome155Y
F046237Metagenome / Metatranscriptome151Y
F053821Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000010833F053821GGAMIASSKNHPKLLSAKAKLSLLRIQPDYPTQRQPLPVILRLSDKDSRRTSTASSSPNSATSYKLSRNPFLYLLYFLYLLYLPTPASAQNFDKPLTNIDEEVTAFAYAPNGNIVFSVRRMFKTKKYDLQRDDIWLLDSSGKRKRLLEGQKFTREDKLFTYQVESFTWSPNAHIIAVQLFTTTMDPDAGARQDAPALLLLDDSGRELHPSGKDPLILEARNPLWLRDNQTLVYLSNEDTPQGLYSMQYLNVSSGPAGKVFEGRTFEGASRISGSNAALAVERNRNWDGPARLQRLDLLSQDDREVATLDAYSGGILVSPSGTRVAYFLDKEVLEIRDLTVPVRIARLRIGLGVLHWSADESRLYLKRTVEKKSADLVTFQVPELRAYPAHSEVPVLEPEPRMLLHGLTIREYSLSPDGRFLAVVLPGKRNLQIFGF
Ga0210407_1000010845F044182AGGAGMSTAGFQVLFLGELPFWLKISQSIVEAPSSSFQIHRSPSLRETLRRLDSEQWHALLLDLSHPSAQELLAARKLHDGLGSVPVVALLPIADPQFLEAAAIAGAASSLVLADLNVASLQRALVTAIDTETLRNSSRKVSSMSFSFEHPSSDHLPASKLEAISHAVNNLLCVINANADILTDQLDPAHNAIRSLTQIKKATKNASDLIRLLKTP
Ga0210407_1000010860F046237GGAGGMEKKIVRFMLISAAAMLALPLAFADSAYPKTASCPIDAGTAHATGKTRKAMQAACTDIEYKHKGTDYSDPRHPQKFNHLFWITHCTE
Ga0210407_1000010863F001909N/AMGRSGTEERRRKGRLKLPRVVRVRPSEPGPNEFDEVLPTQNAAFDSVYFVSKNRKYKEGLRVFVTYPYSDEPGSINREFLGKVARIEELDHGRRGIAIQMLMPLYVGAKETLR

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