NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000104

Scaffold Ga0210407_10000104


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000104 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)107703
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (60.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023668Metagenome209Y
F034860Metagenome173Y
F089175Metagenome / Metatranscriptome109Y
F100025Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000010416F100025N/AMTEDSETLAELMLHADQFCSKIEAAMKDVAPNPEQEELRTKLGQCRAQLAHLQNVFDEEKLNIENPAVRADFRHLVMALMWVAFYARTALDFKTYRRLVMIESSFTYLLVSRSCRADSNRIIDGEE
Ga0210407_1000010434F089175N/AVRIRALQFFFSLAFFFSAARVLLAGLSLGQIYALRFVDVDGNTLLTADGHVTVVVLTAQSNIDQVRAVGDRVPGYCLGNPTYRMITVVNFQKKVAKPTRAILSALMRGRLKAEARRLQTRYNEKNITRDARRDIFAVADFDGAATAQLGARFESAAFCTFVFARNGKLLRQWNGVPRAAELAAVVK
Ga0210407_1000010480F023668GAGMKPLIIRSTKSIISGLTAVLLIGLGHPSAIAQTDTNGKTDEQLLRKLIREENEGKHVIKTTEDSIYVHGAYRRPMIGRAAQEKEESRSLKDISNVSRKSEVVRLAISQSGDMAEEFGNFTLTFDKPDKTHISFEGSYLRVWRKINGEWLEDAFFARRNEPEEKTKKESGP
Ga0210407_1000010487F034860GAGMNGLKKLRIPTFVSTEQATEWGSHLNAEQHTVLVKAQRALSYTAAAEPNLQLKVNLATQSKLMREAAGAFALTCWAI
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