Scaffold Ga0210407

Basic Information
Taxon OID	3300020579 Open in IMG/M
Scaffold ID	Ga0210407_10000065 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020579 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	139249
Total Scaffold Genes	142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	87 (61.27%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

139249

Total Scaffold Genes

142 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

87 (61.27%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000136	Metagenome / Metatranscriptome	1961	Y
F000870	Metagenome / Metatranscriptome	851	Y
F005428	Metagenome / Metatranscriptome	401	Y
F037871	Metagenome / Metatranscriptome	167	Y
F087516	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_100000651	F000870	GGAG	MDSSTDHRKLQEKTARQLIWTSNHSFHGWTCSQCEWNSALPTLLNDPAAKTAYDRLAAGKFKDHKCADHLSRLGSADDADSFTPRIRKLVTQGFKPKDAVELFLQEVALEYRNQPKVLAQAKTDAEDFLRRVRAGLI
Ga0210407_1000006511	F000136	GAGG	MAKSKLSILYGEGDSEVLTAQAAAMEKAGHGVHTAEGRKAVMEALKKGPFDLVVLGATLSRNDRHHLPYMVKKANSETSVLVMHADGSRHPYVDACTDTGASLETVLSRIESMKIVGKTPAAAGAAAGR
Ga0210407_1000006512	F037871	N/A	MKRTDEDQQFGAEFAKRLRPFYQKALAEGQTEKKFARRLGVDRGGLQRYLKESAMPSFRTIVLAYREFGIAIPYASTEPAPLVSGRSKRRRKTLALQMDLPLTIEAPHGEINVVIKRQSPQRIRLQLRAQSLG
Ga0210407_10000065138	F005428	N/A	VNRLSIALVCYVVLGALAWTTLTEPKLRAGTLVILALFAVKSVLRRNDVLHADKEGDAD
Ga0210407_1000006594	F087516	AGGAGG	MKNTILTAAVIAFCLATAAGQAKVLTNDPLTGLALIPATVLFKNVGNEPDKMPDGQVCKSKTQGNFYSLSTVMNPANAIKMDAAAAWYASHLSGFKKIQGYADGRSQIAFYNADGTLVILLTGQLGAQGENTDAFSVSYERSQPGLSVKTIVGLTQGKFVCN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210407_10000065

Overview

Ecosystem & Geography

Associated Families

Sequences