NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000059

Scaffold Ga0210407_10000059


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000059 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)145089
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)104 (82.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003283Metagenome / Metatranscriptome496Y
F016707Metagenome / Metatranscriptome245Y
F033122Metagenome / Metatranscriptome178Y
F073132Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000059114F073132GGAGGMYEAMRQTLLRVNASLAGLLAEARRALCGECDFGVEDVRKIRGPVEEMAPIMGQSAELRRLRPELAGQFDLYKSQLSDMQTTLGQIRVMLLARQASLEAGRAQLSAVSQWMGAFRKTR
Ga0210407_1000005917F016707GGAGLVVMMAAAFLSCAGAFAVTDRLKELQEHFDRENHAGAKIKTLQKLGAAEFDAATQASKAGDYVAVGLIFEKYRDNVRQAFELLRKQEPDADRHPGGYRQLELEVRQGVREVEDTLLVAPEEVHPPLEIVRKDLIDTDDALIHLLFPRRTKDPVKVPPATEAKP
Ga0210407_1000005976F033122GGAGGMANLETQSLTQTGMVEVSGWDEDEVFFVERSELGGDERAGKHLTLSRMLSEGSIIYVRPIQPTAQHRANPIPYEAKFVGCSPEGNRQFRLNGVQPRRSPEDYTVN
Ga0210407_1000005983F003283AGGGGGMVTGPKGSEQDLSGCCSVCGHYGELFDLPGRFEKYCLECSADVAAVILLTTEIDAATVAGRSASELVTEYTCIHIRMLYRAQSAELGNI
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