Scaffold Ga0210407

Basic Information
Taxon OID	3300020579 Open in IMG/M
Scaffold ID	Ga0210407_10000054 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020579 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	154653
Total Scaffold Genes	136 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	114 (83.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

154653

Total Scaffold Genes

136 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

114 (83.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000653	Metagenome / Metatranscriptome	959	Y
F001078	Metagenome / Metatranscriptome	785	Y
F011185	Metagenome / Metatranscriptome	294	Y
F011247	Metagenome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000005462	F001078	GAG	LTDFQPLYIMRKRIFIPMALLSLAFATDAVAQSVVPDTTPTIGPSRPDLFKRIIANQKKDEAAMDLYERVERVETRKNSSDPNPPVVRVSRVIPSGTGMYKIAVGDDGKPRDAAAYRASLEGLARALTQLVNDTRSQRDALEKYAKRKKDRNDLIDATHNAFLFALVSTEQRNDHTLSKYRMDPNPAFRPTTRFTTIFPKVRGFVWIDEASGELARIEGDVTEDISVGLFLGKIYKGSHFMQERYEVQPGLWLASFTQYDFDGRKFFSGFSIHERTFYSNYRYVGPPKEALAAIREELEHAE
Ga0210407_1000005463	F011185	GGAGG	MPRSLSFATILSLFAVVSLAAQPQDSNAPAPPAPSQDSATPVETKKPKKVWTNENLSGASGTVSVVGDPKNKPKPTSSKPVDARYVASVRKQLDKLQGQVADIDKQLVDLKNFSEGEPSTSASGMKLRKSYSSEPIEVQMRALRNKKRDLESKIDVLLDEARKKGVESSQLR
Ga0210407_1000005473	F011247	AGG	MKPTGIKQSWIMAGGVVLVVIGLLFAQFVIMKTARWFQETREHRITRATDSVTPDRLIARCGAPVEDTTTDVYPVVRRTMRYKTSGQQSAVFTFTRTADEPQNWVLLSMKDSAGVAAYETPEAKISALSCLDSTK
Ga0210407_1000005490	F000653	GGA	MQSGIAKAGTEARVVEQKKLTKGRAALLLILSALGAIASATMLHGWHVYLGLAVVGIGLFIGFILWNRQH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210407_10000054

Overview

Ecosystem & Geography

Associated Families

Sequences