Scaffold Ga0210407

Basic Information
Taxon OID	3300020579 Open in IMG/M
Scaffold ID	Ga0210407_10000053 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020579 Open in IMG/M

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	154929
Total Scaffold Genes	144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	96 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

154929

Total Scaffold Genes

144 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

96 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018819	Metagenome / Metatranscriptome	233	Y
F028918	Metagenome / Metatranscriptome	190	Y
F047269	Metagenome / Metatranscriptome	150	Y
F053414	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_10000053108	F018819	AGGTGG	MNDFSPLLIKDWYALGSLLAQIGFLFAAVWFARNFLRTMRAFQEQIGALLKLSITSTPGERQSTSTIARSVAAEAGSYWLPPSQTKPAEPPELTERGPGLFTAGWRRLVHWLNEPMRSSQVSYRRRVMNWLQAPAGH
Ga0210407_10000053119	F053414	GGAGG	MHVLRGVLALSLCVSLCAYNFPLYAGGKPLGILTMAYSAHLNASAAFAGLSVFDGESVSTDREGKLSVRIGGSVITLVEQSGATLQRTGEGAHVDLDAGLVYLWSGESNPLEVHAEGALLRPHGAHNVQAQILMFAPKILQVTTRQGSLDFSYHAESRVLPEGQTYRIYLESEDDPRGTSEPGTQPQKPSMSTGAKVAYFIVAGTGAGLAAWGIHDLIQSNNGVESPAKP
Ga0210407_1000005365	F047269	GAG	VQTPGHRAARSRTPGCIPKMLSLKEVVDRYSSLAKEWGVPVALDAFGLDPEETIKLFTSLDEDYHISRFVNFSMDHGRLYLISGNPSTHIRIDASIRDLL
Ga0210407_1000005382	F028918	GAGG	MHCQPQIRFLAAWLLTLATAFLPAAAQPNRDKNTWCYDGGIFLETDGAIPGGACFRVKGHVTAGDFFEKLKREDTNSGTLFRRGNDIVTEFPKRLRLSMSISDIPCDPHMQQTNSRVYLTAEMIRSLRLNFFWKRALELRPVRGIAESGSEVRPLPWYSHGLEQELPKRFEWLVEFDLPSEGVPLTDNLVLMMYTPEHRLIARGAARM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210407_10000053

Overview

Ecosystem & Geography

Associated Families

Sequences