NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000024

Scaffold Ga0210407_10000024


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000024 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)233534
Total Scaffold Genes217 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)173 (79.72%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009171Metagenome / Metatranscriptome322Y
F011033Metagenome / Metatranscriptome296Y
F018443Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_10000024102F011033AGGAGGMTEILQNHLIVLFLKIYGVLFILGPIVLRATFRFRAKLDPQLVPKESVPPAVQQFMAARTSGITALGFEPVGYIRIAMVSGSTQSFMALFSNPKTLEWADVSVAQSSKQMKGYIEFITRCSNDSQVDTNTNATAPVLSPSPSYHVFRFPQVKDAFTLYRVHRMMVQQNLGGSRPELPPKGQEVAELKRRLERYGARQQQQGYMYLDAAGEFYRLTWKGAALGAWRSIWPISAIRNFMMETKSQSVLRSQGVAQMRST
Ga0210407_10000024162F018443GGAGMKRAAHFLIVVGLLSLFAGCKKQASDADAIREGINQHLSSLKTINLSAMNMDVTNFSVQGNQAQAQVEFRPKAGGPPGAGMQVSYSLEKQNGVWVVQNAQPMGGSIQHPGPGANPNMMSSPSSGSMPSFRDLVPGSGNGSSGGPQALPPGHPPLNGQSMPKAQ
Ga0210407_10000024172F009171AGGAGMSRRLPLFFLAIMALTVMSVSVWAKNDAGDSLTANVKLTSTTTVGTTKLAPGSYKVVVEGSKAKFEQGNKVVAEVPCTLKDFAGKINETTFVIDKDQLTEIQVAGKAKSIEFSSGM
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