Scaffold Ga0210407_10000021

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000021
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 240083
• Total Scaffold Genes: 249
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 213 (85.54%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000063	Metagenome / Metatranscriptome	2803	Y
F000208	Metagenome / Metatranscriptome	1593	Y
F000272	Metagenome / Metatranscriptome	1408	Y
F000410	Metagenome / Metatranscriptome	1170	Y
F001800	Metagenome / Metatranscriptome	632	Y
F002000	Metagenome / Metatranscriptome	606	Y
F002560	Metagenome / Metatranscriptome	548	Y
F004586	Metagenome / Metatranscriptome	432	Y
F015370	Metagenome / Metatranscriptome	255	Y
F019863	Metagenome / Metatranscriptome	227	Y
F025106	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_10000021116	F002000	AGGAGG	MLKAVKESVHRMTSHLQLISGYLEMEDYSKALRKTKETIKELHALATSLTGLANVGMTVPKDGAVVVPHGSRVVSHEDVNVDIDSDEVRSVDKDEVRVGYGDDNPKTK
Ga0210407_10000021117	F000063	N/A	MLAEGVWAEVQVGKVHLRLFSENNAQGTQASVYNVNAKTWIAPSEEVEDIEEGKERTSEHARAYLKDVANSELPPLEWKASRSR
Ga0210407_10000021120	F000410	GAGG	MSRKLIWIEQQHFRGFGCSECGWRFKPTETATGRSFDEMMRNFELQRDKEFTSHVCADHPKQV
Ga0210407_10000021149	F001800	AGGAG	MKPTFKKVTTLLSMLLAGALLTAPAVAQSGAAQADNFRDDDDPLAQMAELEQLHATFHAAVSVHDPVNGDSPAVITQRIRNILAIFTQDAELTVVSTAASAGNYIGNGDPDDSANCPPPSGDTSATGQQGTLCTFFKYVAGGLQATNKFVSLSPAFKTKYVPVKDAGQWTSSVYFECHYFDVSLNPATGLPFWTARSHVNLQGEAQKINGVWLLTHVTSSAVGVPVP
Ga0210407_10000021183	F025106	GGAG	MQPLAGGPSVQLTHFDSEPAYVAAYAWSRHGKKFAITRARYNDTDVVMFSGFR
Ga0210407_1000002135	F000208	GAGG	MRIRVTTRADLLEKRKQQHIERGYRIEDERPIPVNGLCSFSAVCETPDSDGVGDLVAQRLNGMAK
Ga0210407_1000002136	F002560	AGGAGG	MIAPNPPPSADVGRPPAISLPIALYVSGELIFELYDGGQPCRRFSIRWERLVPTKENEPETQRSQAVLRTHPD
Ga0210407_1000002173	F004586	AGGAG	MTTIEQTKCAHLPCRCVVQAGEKYCGQTCQVAGSKDVEIGCQCDHRPCPLTV
Ga0210407_1000002193	F000272	AGGAG	MSQTVIEQTAGHIAASARQASRATTAVADAIEDGVGVMRRAAKQGGDAAEEFLTDSTQRIQRHPALTVASTFIVGFTAGALLGWVIKRR
Ga0210407_1000002197	F015370	AGGAGG	MLNVTVASLGELAVVGCEGRMVARESAYKLREAVISQTDARIVVLELSEVRALGGGGFGMLVFLQRWAREHNIRFLLFHPSKPVQSKLENARSIAQFYIASLEEMGALLAYANSRYALAV
Ga0210407_1000002198	F019863	GGAGG	MSYTEARSHFEKAKLDNPNKGMLDLLDGLKHLSHALEEDFRTLEQSVRNIRDVQSFKQIPGSFK