Scaffold Ga0210407_10000013

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000013
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 267774
• Total Scaffold Genes: 225
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 144 (64.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000515	Metagenome / Metatranscriptome	1062	Y
F000867	Metagenome / Metatranscriptome	854	Y
F036390	Metagenome / Metatranscriptome	170	Y
F040754	Metagenome / Metatranscriptome	161	Y
F043019	Metagenome / Metatranscriptome	157	Y
F089215	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_10000013101	F089215	GGAGG	VHSPTKILLTASLLLISLGMWAQESDHPSDSDLLARLSYANSTVVQSAGVHHVCVAVTRDGDYRMVRSTDDGQTLRLRGKMPKEQFQQLTKLLEESEFRALSGYHGGLIRQDAESFSAELQGPMWEHADGTRRWMERDVWRLQWLNADGESPFPGSVAKVVDWLQRFQPVGGKSFLYAEFPDVCPTGGLRLVQPAVAANRHP
Ga0210407_10000013139	F043019	GGA	MLAARKFGITCPICKRFCKIGYIEIEDTASVGELRAKLLQQGWKGESARCDSLKCEGEIFCSFNLAIFER
Ga0210407_10000013166	F000867	N/A	MSPRRVPHFSRVLGARSGGVLNAIALTALLLLTACSPRDFLTHRLATDLISASDPFRIPQQFALQTGIVSNKNYVSPEYLILQQHGWISATAARCLPGMEPPPCWDVLLTPSGVETVRALVPAEEANQTSFFIPVARRELVAVTGISKQGSLADVDFTWRWVPLNEVGAALYSGDLHYNSTVGFRDYDDGWRMVVAPTTPRPGQPLDDALKNAEPVQ
Ga0210407_10000013199	F040754	N/A	MATLSSEPFAGAVPNPRSEVFKRILRSRWTFVALQVLDLFTTLVAFHFGAFEMNPLVARLTVQFGWLRGVLISKLIAVAIAMGVRKRLWIVNILYTAIVAWNLMVIIGLFLRGK
Ga0210407_1000001347	F036390	GAGG	MPPIEILSVEEASESAAPTAIPPKDRIPARRRFYALSVRDHVRLLLPFLLAGAVGVLVRAKYPYWGPASELAYFLADALIVAMILGVAFDLFSAKLLVERVSDGLAQTLVGRGLPAEMQGLVRDVVSTDLVRDHYVKSYAFSTPENGRVQVDVEVRYEIRNYSEAVRDYAPELTPETFFQPEFRFLEYGIAGRKIYTFSDQNLASKVEIEDTLGVTRVPRSALPTLSLNPVRAGEKAACQVTWRYGLTVPEQYCDVTDLDEATLGATLHVETLPEELEFVSGCDASLHHEPGSQSWYFERAFLAGQHLRAWWFRRKPQARVPRPRT
Ga0210407_1000001362	F000515	N/A	MTHFPQVHPSRRAARVQLGDSVLAAIRLEDGRRTKAKLQTISVTGGLLQLAQSLAQGDFVEVAFQTQAGPVHGMAEVLTPMRKMDEGVLQPFRFVALEDDDHRRLRTSLDHVVDRKLLGMKASAFSTY