Scaffold Ga0210407_10000010

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000010
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 292286
• Total Scaffold Genes: 250
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 211 (84.40%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000180	Metagenome / Metatranscriptome	1730	Y
F002273	Metagenome / Metatranscriptome	576	Y
F021622	Metagenome / Metatranscriptome	218	Y
F024610	Metagenome / Metatranscriptome	205	Y
F027914	Metagenome / Metatranscriptome	193	Y
F029511	Metagenome / Metatranscriptome	188	Y
F076314	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_1000001010	F027914	GGAG	MAASLLVLLSGELLKWQFPALATGEKLASLATALRKVIPVPACELIRR
Ga0210407_10000010106	F002273	GGAG	MGGDVIGLVAVVLTCGIPLALMYTFYRVRKLRTEERLAALARGTEIPMEPELSQYARSRRAGILLVSGGAGFILMFAMIARVVGEPQTLVASAFGILPLAVGLGYFVDAALIRRDLKAS
Ga0210407_10000010121	F021622	AGG	MPANFRPPGYRWFYFLRNDPVRVGIYTGVWLSVVFVAWVVIANRVGFLDPLAQQRNAIATLLLAMIAAMPVLRFLRAPADMLISGLLAWGVLTLAYRILSLEFVLLQNYYSTFHVFVLGAVAYLLFATLSWLGMIVWRARAAQGTHTSR
Ga0210407_10000010187	F029511	GAG	MLYWGSGPALGLLTCLGYGIFLLGSLYLWRYREELTLWMEDEFSSFRRNLSRYESVGPFYLPRTESRLRVIPAGFLHLVSRFPHRRFSLGAFLLVLGLLLFTLDFFI
Ga0210407_10000010198	F076314	GAG	MQATPQRAHPTEKFLIASLCFLAVLVLGAFQFGDNNGLNNMPFAKVRLLVPNLPKAQKMANDGNLDLLAGKPVPGVAVTLRGELTDANCFLGTHTHAYDHAFCAKFCAAAGSPLLFISDQDALVYVVLTARNGIQLPESVLNLIGVPGIVVKGRTLEANGVKALAVESVQP
Ga0210407_1000001077	F000180	GAGG	MTKEQSFISADHIDLDPFMSSQTRERTLNAAIIQANIGESFEEYLEIFDAFYADDIEVSGETAKEPIRGKGRVRSILANFLVPLHLMAEVGGLSVSIRQTAIAGDVADETHSAWTLELVGVSGRTCTVSWCTLRKWNGSRVVYEHHYDEQQNGGPLTSDDLNLNEAKADPPSTIQ
Ga0210407_100000109	F024610	AGGA	MKSNTLVRSIALAAALAITVPLFAKPVAKALAVPHAVKFGNVDVKAGDYRAMIDDNHLTLLNGKKVIAESAGRWEERSQKSPYTVIVSNEAGRVTELRFEGKAQVFVLSE