Scaffold Ga0210407_10000005

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000005
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 352099
• Total Scaffold Genes: 286
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 191 (66.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000131	Metagenome / Metatranscriptome	1986	Y
F000348	Metagenome / Metatranscriptome	1250	Y
F001343	Metagenome / Metatranscriptome	719	Y
F001399	Metagenome / Metatranscriptome	705	Y
F003336	Metagenome / Metatranscriptome	493	Y
F005270	Metagenome / Metatranscriptome	406	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_10000005204	F003336	GGAG	MSTNGTAAYGMYPRNVALPEVVCALNSAGFENEDICMVLSPAHPAATVVADAKIVDVEREESATSARMIGWFSEFGAVVIPTVGFFIRSQAFFHSLVIEQNFPALSRGSRTLLGLGFSEGEAKRLDHQLCDVGAMVFVSCQESRKADSALELLRRAGAREAASLEPAKMAAAV
Ga0210407_10000005266	F001343	AGGAG	MKFTTVSKSLMMGLALLLASSAFAATKADLVLQNPTTINGTKLKAGEYKLQWDGSGPNVEVSITQGKKVLAKVPAKVVDLKTASQNNAAVVKTNDDGTSTLAGARFEGKKFAIELGDAGDGMQAGSSK
Ga0210407_10000005277	F000348	N/A	MSLVLRAASDWRPVGQTDAGDRVSVSSVRVLKNNQRLALVRVEFKEPAELPQGGPFVEMRARVRFNCASGGAAPTTEWFYSRDHSGRFVVSKKATHDDEFGKNPEGGFVDLVSKNVCGQS
Ga0210407_1000000551	F000131	GGAGG	MGSWVAAEGNRMGKYLSRIRFLRRWVALGFVGLFLGLPLHGEPISLQALVTPSTVIQKDGHTVTFAVHGFIEFESLAQLFPYIDSQTRRWKGSADLSDGARQNLGRDLLRRGIESRVISMADERPLETLITHTREELQHALSRVKEPMPPGYADEFLAVQEKWKHSLNCWSAAPSIAARVLSNWYPIEEGIVLYGATYDSTEHFWQSVKYHPDVTVDDLHALLKVMQTKDWAEWLKRLDDDPKIYLPNAYAVEFLRHNLASQRLRWFGEELERHGVRANHRVRMIQQRGEKPFRFSGFEEKVLWGDLADVFHLVYILSPPDDPIRKTLESQHFDGIYLGTRKMGFISEEFRSLMLEIWKVKFLQLPRFGEVIRSIPMEIRLSHFLNDGDSPDIPIPVYVEYLNQIREMARANGR
Ga0210407_1000000583	F005270	AGGAG	MNPIINSTPNDEVSDADLASVVASLEPDQLISAKEKHHCPRRRLTRTEMVVFWALRFYLVFMFGVVIYQVWTGAR
Ga0210407_1000000595	F001399	GGAGG	MKLNDSISTYDVAEALQGETGKFEVTSPTGERYFVTCQPGHSIVSLEWAGTEPNLQPFLVRKVAQPITTEGRTKRSAAA