Scaffold Ga0210407_10000004

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000004
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 413123
• Total Scaffold Genes: 364
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 244 (67.03%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000595	Metagenome / Metatranscriptome	999	Y
F000822	Metagenome / Metatranscriptome	876	Y
F000900	Metagenome / Metatranscriptome	845	Y
F014402	Metagenome / Metatranscriptome	263	Y
F016447	Metagenome / Metatranscriptome	247	Y
F025536	Metagenome / Metatranscriptome	201	Y
F042486	Metagenome / Metatranscriptome	158	Y
F048518	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_10000004132	F000595	AGGAG	MDGITGLAAVIMFLGMPTAVLGMYTFYRVRKLRTEERLAAMQRGVSVPIEPDLTEAAHSRRAGILLIAGALGYMLTFSIIARVEPDALVATAFGAIPFALGLGYLLDSTLIRRDARAS
Ga0210407_10000004171	F014402	AGG	MAWLRVLYTIMGAVIAFAVGALIWPVRAREGLRGKIANILDGAGALYRAITAAALQGIDNEPQVRELDRRLHDLRRGITQQMDEARSELSFSRFNEGEYQAFVDQADQVRRRLTAMAEDSALYVQAQLQPGLVPSLPTLVEQTTHAFAALADAVRKPGEVANSADLDAAICALDADLARLREQRATAPLALDRMLPFWALVFNLREVAQDLEQLGSTLPQLV
Ga0210407_100000042	F016447	N/A	MSVVENNQAIVESRKSGLELSSYAPTDFEFAEFFDGGSEYLPFLRPPLWPFSLLRLFRQEEE
Ga0210407_10000004262	F000822	N/A	VLALAGVAQAQASHVYRGEISDSQCAMNIHSLTKSHQEMLKSKAMGGTSNTCSVYCIEHLGGYLVLSVGNDVYRLDRSDLVHGFEGQRVAITGILDPKLKTIHVQKIDLEQAP
Ga0210407_1000000434	F048518	GAGG	MFTAVKIAISLLAFAAACMAQDGLTIDNKHREKVSTPEAEKIYASACSVVQREFGLRHALHPQVRLVLGADKNEVWFVGREIRLTKWDRYTFAQGVVWLAFEDLMPSQQRVTIAKRAVSWADSTVEIERLAK
Ga0210407_10000004360	F025536	N/A	MRLADPAATLAYLSLLFGFLLVLFPVSFPRLIVENWQNARLTPIMILFTVSVNLGLYLSVAHHRSARPGIAAAACLGSVPVFVLAGLNFVLQATIVHTFSSSVPNASLRVDEEILAHTYFSMIAAIFAPFLIIRLTQQFKKTDA
Ga0210407_10000004361	F042486	GAG	MVAFEIFALTADWMAAKWLLWIALYLIFGLFLPWAMTSAWTSQHRSPMKPDLKQLFQNGELGLISLMLSISVIWDLQRSQYSSYTIALGSVFMALAGMMAGSVWIEAYCRRTTGIRFRPDRAWRDSRNLALLVFSLALVTEILLDRFAKAAL
Ga0210407_1000000450	F000900	AGG	LGTEILFILMLGLLVLGPRQLHTLLGHVARAKAQFEEASRGFKSQLAAELDAVHQDGEPDASHELAGDQ