Scaffold Ga0210407_10000003

Overview

Basic Information

• Taxon OID: 3300020579
• Scaffold ID: Ga0210407_10000003
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 434247
• Total Scaffold Genes: 395
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 258 (65.32%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000214	Metagenome / Metatranscriptome	1570	Y
F000299	Metagenome / Metatranscriptome	1341	Y
F000414	Metagenome / Metatranscriptome	1169	Y
F000725	Metagenome / Metatranscriptome	918	Y
F003947	Metagenome / Metatranscriptome	460	Y
F006606	Metagenome / Metatranscriptome	369	Y
F009346	Metagenome / Metatranscriptome	319	Y
F009711	Metagenome / Metatranscriptome	314	Y
F023747	Metagenome / Metatranscriptome	209	Y
F025556	Metagenome / Metatranscriptome	201	Y
F031621	Metagenome / Metatranscriptome	182	Y
F047734	Metagenome / Metatranscriptome	149	Y
F048375	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210407_10000003127	F031621	AGGAGG	MSANSKKSMTWTFVLILLGMAALYGGSRWLTILIPAAGLVWYIARPMLRTGRN
Ga0210407_10000003132	F006606	AGGAG	MKRILLAVGVAVLLLNTLVIPTVVRADGGGNGGTSCGNVLCKP
Ga0210407_10000003134	F009711	GGAG	MTLAIILVIAAAVALIVILGVALSRSLQLSAGTNLATQIQPIDVEAFRNLIDPAEDDYLRRRLPAAEFRIVRRRRLRAMAAYVHTAGRNAAVLVRMGQAALAAGDVPTVEAARRLVDNALLLRRNAAFALLRIYLALAWPNSGLAAEPVLRGYEKLNGSAMLLGRLQNPATPVRISASL
Ga0210407_10000003151	F025556	N/A	MRESPEGRTIHGPPEWRVRAVNESTVKGWYKVTMDSGEYKAKRTALEDSFETQFEQHGSPDGAALFSRRDEKSATWEYYFTPEAMAFSLDVVKEYAWGKEFAWGQACSGPPANVKGLSLCGGSPGKKYADLAQTSN
Ga0210407_10000003163	F009346	GGGGG	MSFEDALALASRDEGFKATVYAMNTLLIHKGIYTQDEFQALFVEWVEKEQRRKAPEPKRAEATNAFSA
Ga0210407_10000003196	F000214	AGG	MVMKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMISDMGKPALATAVNGPQATARISIPAPPSIPAPQAVRAAGWDDTAKRWP
Ga0210407_10000003227	F023747	AGGAGG	MKYPSSALAGTLLLGLAAAVAQQSSTPVRWAEGAPNATSEMKNDTKIEGLKTDDVHIFASIADLKETQYNRVWIQVANHGKTPIDFDPQAVVLVNVVKEKMVAAEVPDKAAKSIEKFGEAKSQEMSSAKCENMAATQCQPAPAQLQVARQISAYSSQQAQWIRDNALTKKTLAPGEEVQGIVVFRKDKKAASYILRCPVGTQIFEFPVTAENKEPSYD
Ga0210407_1000000323	F048375	N/A	MRDREPLEVALRRGNSATPESQAFIPDDMSGQILVLWSERFAPNLQRRFVATAQSPYYLADEQTEPVFELSLSGVTTWEGRPALTQGRIYGVFQNKQAEFEKCYEQIIRYIRRHWRKNPATWMGGYVGPAAGDWFDRGGLLLPNYIPPVRSDWIQRLGEQHPE
Ga0210407_10000003257	F000725	N/A	MTRALQTLRAVQWAMLASILLYAIVGEAVGPIKRALDPSLSYLFTTLGVAIVGVIFVVRRTLVLRAAESLATHPDDDLSLNHWRTGYFATYALCEALALFGLVQRFLGCTWQQSAPYYLGGFVLLFFFRPRLPARV
Ga0210407_10000003365	F003947	AGGGGG	VDFQVNGETYFLSLAEDERRWLVLVESATGTRDVPVYVDDAESDDFKLVVDDKERRKILN
Ga0210407_10000003370	F047734	N/A	MRRRYVLAPEAARDLVQIWRYVKKESSARIADRVEAAIRTRSFR
Ga0210407_1000000382	F000299	GGGGG	MENGQNAIGSLRPVERYDVGHVQEVIRQAHGELRQLLLQRSEIMKRIGTVKQTISGLANLFGDGVLNEELMELVDRKSGGRQPGFTKACRMILMQTGRAMNARDICDYFEQKMPALLARHKDPMASVTTVLNRLVEYGEAQAVLSNGRRAWRWVAEVPEDVSPANGETGLVANVS
Ga0210407_1000000391	F000414	AGGAGG	MSAPSRRPEIRRRRTRKEKIVQLRKRLAAAKTDVDKTRITAKLHKLAILSPGQPLIK