NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194129_10190122

Scaffold Ga0194129_10190122


Overview

Basic Information
Taxon OID3300020578 Open in IMG/M
Scaffold IDGa0194129_10190122 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1262
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075694Metagenome / Metatranscriptome118Y
F093776Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0194129_101901221F075694AGGAMAGRGMGAAARGGGAVMTGAAQETMSEPSKSTGVPMMAKGGMANKGNVNEHKRMAMGKPIKKMGGGMMSKGYAAGGMMSKGYAAGGAAKKMAKRA
Ga0194129_101901224F093776GGAGGMSFSNIQAVQKTTSAQGVNGRARLLGVYFTHTATPATLLLKTGGSGGTTRLALTTPASAGSQDLVIPNIGILFDDGIYIAISSAEITSVTLLVEGGAAA

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