NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194129_10041590

Scaffold Ga0194129_10041590


Overview

Basic Information
Taxon OID3300020578 Open in IMG/M
Scaffold IDGa0194129_10041590 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3635
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023360Metagenome / Metatranscriptome210Y
F026558Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0194129_100415903F026558AGGAGMNSQELIKKNPIYGATYEQMLSYQYAYLGGQVFKRYVRKKRPSEDSQLYIDLVNNTVAQPICRYIVETINDVLFEPGVKRDLKFCTSTGQKIDPDNIEWAQLFCLDADLQNRSIDAFMENVGELSSIYGYCWVFVDMAMQGDANYGRPYVVAINPLQVWDWEWEWFGGKPMVKYCKVLETETKDDYYIKCYHLGTSSTPSYFVSYRLGKNISKEDVEEIGRGDYPAGMSVPAFIAYGRRDPRTLDFGISDIDSACDAQREHYKLECEAYTSIQFAKTIIRADKGVSIPVHAGAIVRATQGQVESIPVDTGDVDKITARQREILEQIEALTGLGGLRNTKNQLASGIAIIEERKQLHRLAKSKARLMEVTEELIFTYAARFMDMRWAGEIHYNTDYEAHDTNYRLALFQQAKTLVQNNGIVDSLITKEIIAMLAPSTSIPQYEQAYIDTITDEQVKTLMTDENNTVLSRDLGNQIPTPEDFNEDEDVYGDTLEYDSGEGAAIDNGIGTPVAYTGQSYSTQQAVATQIVALNAGR
Ga0194129_100415905F023360AGGAGMAYVLNGGNDEADGFTAAIANFALRAMHESTGLVDYTTVVAPNQGNQYLVPQFAPITYQDYNPNANGGANGGFSPNANVSFGAVEQNPALGQGTITASPTVAATAFDIFYAWTTSFELAATLGAELGESYGEKVDQRVCGAFTSFKATVSNTNYATTPLDGFNRPTELGAM
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