NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208053_1003429

Scaffold Ga0208053_1003429


Overview

Basic Information
Taxon OID3300020575 Open in IMG/M
Scaffold IDGa0208053_1003429 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 20MAY2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3616
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062431Metagenome / Metatranscriptome130N
F067403Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0208053_10034291F067403N/AIFTTYSIQEAWVDLYRSKVSGLLLDKTDYPPVTITVDAEIDAARVHTPAAGSIPNNVLETHYVLGSTRATIVPSSGKTMSFFYKPVYNTSIETIADGLASIIPHMSSVMCLKANQYPNTPKTKKALEDLVNLMLDQVNKEVTLFKALIIEWKFKENAIPIAVPNNYTVNMSLDVDDVVRENLINCRRQMENLKQGFRFITDPIDLALLMFEHDLLMAEIKSIRQDILTPLTNPLSLIDLNNLDEASGTNPTLLKHESLSGFYLQVERRLGYIIPAQGESKINSFGRANPFYKVTLMDYLTLGISTFLALGFLIQCSMVTANTFMRWRAERDERIREQERYRFRVNRIERLQPTIRETVLPTCENCSEKREMYRTRPPSKVIKRSHRNKGHIPSHLRGSKLDMNQ
Ga0208053_10034293F062431N/ATAERNVNPRFWMDERTVDTLSQKLTVPLQLQLDSVSDGLKEEYRNLLGSLREDLYSLKMETVGFHGTLDQRLINALRTLFNEIPDEGINNTTHAINLDDTSHPTTSFVNWIISGIWF
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