Scaffold Ga0208053_1000028

Overview

Basic Information

• Taxon OID: 3300020575
• Scaffold ID: Ga0208053_1000028
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20MAY2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30817
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (17.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008423	Metagenome	333	Y
F024312	Metagenome	206	N
F035308	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208053_100002830	F035308	N/A	LIDTSNIFETCKEQEIAGYPCYVFDIDGTTHYVFGETQEERFNFMADIINNYNGKSKQQ
Ga0208053_100002840	F024312	N/A	MTSLSRLWDLREEVKFWNYKVDTSYPQNASEMINQLNAAKYKLKLHKQLHFPELLDQPKRDYIPYQMLADKFEVFENYLND
Ga0208053_100002844	F008423	N/A	MSKLIYQEKQLKLHKRATILLELLKQAQGRQNLFEADLAEWRRGLDDTRTMISEEDLLIKIARMNDIQKRILKSYHFLILDLYTLTEEFMLPINLLHF