NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208221_1049471

Scaffold Ga0208221_1049471


Overview

Basic Information
Taxon OID3300020574 Open in IMG/M
Scaffold IDGa0208221_1049471 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)785
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002353Metagenome / Metatranscriptome567Y
F006051Metagenome / Metatranscriptome382Y

Sequences

Protein IDFamilyRBSSequence
Ga0208221_10494711F006051N/AFADVIRCHILEKYMSSYMRERNVDALLVLRNEDKWAMTGNFFYSFA
Ga0208221_10494712F002353N/ALFLDIVSFYYFSSVWFLYGNFSFLVADVEVKDDGVFIRLRKENVVCEDKDSSEWVSSSGVHESVVEKVPEGSGSEAAVSLEAIPEDLTFDSGEAFSLEGVDNIPMEELFCGSHGDGSAAGSSDITSISLDTVLDLNLAS

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