NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208221_1000005

Scaffold Ga0208221_1000005


Overview

Basic Information
Taxon OID3300020574 Open in IMG/M
Scaffold IDGa0208221_1000005 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55310
Total Scaffold Genes117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (62.39%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F008943Metagenome / Metatranscriptome325Y
F010764Metagenome / Metatranscriptome299Y
F012107Metagenome / Metatranscriptome283Y
F037700Metagenome / Metatranscriptome167Y
F076003Metagenome / Metatranscriptome118Y
F089902Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0208221_100000524F012107GGAMRVDVICPSAPWENTTTDEDRAYDLAYDLSEEYQCGVDLRYNETGIIFTTVYA
Ga0208221_100000549F076003GAGGMTKMKLTAHQLAVIIDTINHSLMVSNWSGVYTHKSREDVRNAIANIMGQMSVEVITDKAEFTIDADAGI
Ga0208221_100000550F037700GGAMKKYRIKKETYGDTTKYYPQQKFLYSWYNIFAYEVYFDGGYDTLEEAQEQLCEYCREPVVEYLDFDPNEDCK
Ga0208221_100000551F010764AGGAGMIKISKTYHLALTEQQAKELYEFLRGAKDCGHLSTDRDLVLVYHELKKLFAVGIR
Ga0208221_100000553F008943AGGAMKNFDEVTLAIFAFFFVIIVAAGAITYEDQQQRALFQQTYNKNLECRQALKDQTVGRITDICGTVPVIGDFVK
Ga0208221_100000555F000919GGAGGMRFRNIEFRWSEFNKKYELVSWYKDCNQKELCYVIAFFDKGKECYDMRTIGDRFFEDKDAWVVGKYGLEFLNEIFEIERIEEELK
Ga0208221_100000566F089902GAGGMTTRAQKLMDDIWHERNTWADTEQKLVAAIIRKTMEHVKSMTAQKLNNLTVLDKGDMMTLSKEVENL
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