Scaffold Ga0208221_1000004

Overview

Basic Information

• Taxon OID: 3300020574
• Scaffold ID: Ga0208221_1000004
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68049
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (56.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008943	Metagenome / Metatranscriptome	325	Y
F010764	Metagenome / Metatranscriptome	299	Y
F014121	Metagenome / Metatranscriptome	265	Y
F018913	Metagenome / Metatranscriptome	232	Y
F089902	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208221_100000425	F010764	N/A	MIKIQKTYHLALTEDQAKELYQLLRTERDSGCLTPDKELVLVYHELKNLFDTGIR
Ga0208221_100000427	F008943	GGA	MKNFNEITWAVLSFFFIIIVAGAIITYDAQQQRVLFQQTYNKNLECRQALKDQTVGRVNEICGDVPAIGAFVK
Ga0208221_100000429	F014121	AGGAG	MTNTAYQIWETFKAELIVEPTDDMKEALASSIRVISSIIHRDGVLANEPWLTHTAQELNEIADDMEAL
Ga0208221_100000431	F018913	GGTGG	MTNQQRAEELLKVICKSEAHNTAWMLQEVLQQLRKQLSGTNKIDFTDELDVMFNAGWDECLKEIDAICDELLEL
Ga0208221_100000443	F089902	AGG	MTDRAQKLMDSVWQERNTWADSEQKLVAAIIRKTMEYVKTMTAQKLNNLTVLDRSDMMALSKEVENLP