NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208485_1038003

Scaffold Ga0208485_1038003


Overview

Basic Information
Taxon OID3300020573 Open in IMG/M
Scaffold IDGa0208485_1038003 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 17JUL2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)903
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007690Metagenome346Y
F024555Metagenome / Metatranscriptome205Y
F038242Metagenome166N

Sequences

Protein IDFamilyRBSSequence
Ga0208485_10380031F007690N/AGQPIWDGWEVKLIYEGNHNDTYVFQLVKRKPLPMHNELCTIMLERIGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKEKL
Ga0208485_10380032F038242N/AMLTIKNIKELELNFCHSRGLREITETQNKLSEQFYSFHFGPISDGNGYNKEIEVRLGRNLKGKDYEIFVMGLHLVTRRFVTIDDVKTKGGLASEISKILAKAEHWWKNEVTK
Ga0208485_10380033F024555N/AMLTIKNIEKLTQYGAVEDWRVGKVVTLDSSYLIQLYKHNRRETMQVNIERTPIGEGDTALYELWFWADDSGGAKPIRRLLRKCDFELGPPY

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