Scaffold Ga0208485_1014731

Overview

Basic Information

• Taxon OID: 3300020573
• Scaffold ID: Ga0208485_1014731
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 17JUL2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1685
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida → Tetrahymenina → Tetrahymenidae → Tetrahymena → Tetrahymena thermophila → Tetrahymena thermophila SB210 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003542	Metagenome / Metatranscriptome	480	Y
F009333	Metagenome / Metatranscriptome	319	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208485_10147312	F009333	N/A	MNNPSNVSRFNRHELFDSEWMDYHTITLRMVENYHINRAESWYTPLYNMLCGVWDGYLYTEMLEVAKGMELPTPLLQRIANTIQFIGTSQK
Ga0208485_10147314	F003542	GAG	MRKKNFDYDLFESKIGYDSVNKQYLIRVYDYLTNEMEYHPAPTWTGIMRKMLGDNPNNCNPSGYYSSVRTCLKEIGVCYFDSTKRCMVKGRNWDRFVSDESWNWFIMRTGSCEYSTIIK