Scaffold Ga0207909_1012307

Overview

Basic Information

• Taxon OID: 3300020572
• Scaffold ID: Ga0207909_1012307
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1670
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002869	Metagenome / Metatranscriptome	524	Y
F029756	Metagenome	187	Y
F083707	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207909_10123072	F083707	N/A	MNQEIELTPEGGRYYRAMAFHWLIVAVFILPVAAALIAAVVNPFWFRNSMFEWVERGVNRLSRWRNYQKYRIYLGCDPRMWHTLRGDLQ
Ga0207909_10123074	F002869	AGGAG	VNTSEITEEMLDRKTAWCEQNLFWSSAAKVQKMTDFYFEKTRDSVDQDWPESFDGVYLAQVLNVERVSYRIYYSQDKLTCRLFVFLPHCTYPEKQKMLDMGFVIAKPGDTDNIPDKPVEQIVEEIEQ
Ga0207909_10123075	F029756	GGAG	MNKRKITTRVIFDGAVDKTYTQMRQVYTDDQGEYVNCDRRQYRIDNNSFDIVYTSGQAITFSQLVEKITQG