Scaffold Ga0207909_1005775

Overview

Basic Information

• Taxon OID: 3300020572
• Scaffold ID: Ga0207909_1005775
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2709
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049633	Metagenome / Metatranscriptome	146	Y
F051131	Metagenome / Metatranscriptome	144	N
F052593	Metagenome / Metatranscriptome	142	Y
F073556	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207909_10057752	F051131	AGGA	MSNPNFVYSGATFLRFATYPELQARDSRVFEANEDLTQAKIENFLNKASQRILTQIRNTEWWREYQRRMAQIVDPNLLPNVNPDYILARTQEFKDLNIYLALNEYTYPTIADFGNPDSAEFAKIKFYKDSYNVLFDEVIEAGDWYDFSENATIDTADKMASVVNRVRTR
Ga0207909_10057753	F049633	GAG	MRTELLTYLTAQLTGSIKTSQELPFQEGTNPLYLKNARRVYLDEPYTEQDTLLPTLGTLQINQRTTIVRWYLSMDAKNRNTDLDSALTILGGAKDITTITGVFTRLFDYTVSIDNDRVIYEGQYRFANLA
Ga0207909_10057754	F052593	AGGA	MAFIFPAPGVAGVQATLNISVVGDASNLVVPAMQDITVNNANDVMTWTQLDSGSKLQVATTATNSLDLNLVLDQTTFFGTGSGAAVAVNKGIFGLSKDKQLVEFQLYLGDTSAGGAGKTLGGFGYITGLAPTVSADSPVWVSPVTLTITGDYTVA
Ga0207909_10057755	F073556	AGGAG	MIFDDKTDDEIFRSIEGEVAKALAELRCARRDLEQSEVRMKFALATIHYLKQRYEGK