Scaffold Ga0207909_1004455

Overview

Basic Information

• Taxon OID: 3300020572
• Scaffold ID: Ga0207909_1004455
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3180
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001781	Metagenome / Metatranscriptome	635	Y
F020167	Metagenome	225	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207909_10044552	F020167	AGG	MRTIDELVNEMYMDNEQHLEYMENMNGGDCDCSIHTTLNTIVEYWWDK
Ga0207909_10044553	F000868	GGTGG	MSFLENENEMVIDMTYSEIGAMLVEDWVNANLDEGQMFADFRFAEMSDSNYLKGRFNLFYDLNVGDQYYLECEEE
Ga0207909_10044555	F063705	GGAGG	LTKSSAFLEYMKIHLISLNQDWEDSKNSVPLNEDEYDPSDDYYIGATEAVEHLLSVATDIMNNSTNERYE
Ga0207909_10044556	F000263	AGG	MNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGARNEA
Ga0207909_10044557	F001781	GGAG	MKPDDKDKLNKCLEILDTTDLGLTMVWLWTWSTIGNIIEDNTWHATVTLDDMWPHLCEAVEAGMGFSLEYGAEQHYEDVLDWMMSRGFIGDPLDILEEEDEDEDE