NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207909_1004455

Scaffold Ga0207909_1004455


Overview

Basic Information
Taxon OID3300020572 Open in IMG/M
Scaffold IDGa0207909_1004455 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3180
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000868Metagenome / Metatranscriptome853Y
F001781Metagenome / Metatranscriptome635Y
F020167Metagenome225Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0207909_10044552F020167AGGMRTIDELVNEMYMDNEQHLEYMENMNGGDCDCSIHTTLNTIVEYWWDK
Ga0207909_10044553F000868GGTGGMSFLENENEMVIDMTYSEIGAMLVEDWVNANLDEGQMFADFRFAEMSDSNYLKGRFNLFYDLNVGDQYYLECEEE
Ga0207909_10044555F063705GGAGGLTKSSAFLEYMKIHLISLNQDWEDSKNSVPLNEDEYDPSDDYYIGATEAVEHLLSVATDIMNNSTNERYE
Ga0207909_10044556F000263AGGMNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGARNEA
Ga0207909_10044557F001781GGAGMKPDDKDKLNKCLEILDTTDLGLTMVWLWTWSTIGNIIEDNTWHATVTLDDMWPHLCEAVEAGMGFSLEYGAEQHYEDVLDWMMSRGFIGDPLDILEEEDEDEDE

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