Scaffold Ga0207909_1003367

Overview

Basic Information

• Taxon OID: 3300020572
• Scaffold ID: Ga0207909_1003367
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3765
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F021296	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207909_100336710	F021296	AGGA	MSDTRTSFLELDDAPVKIQPNTSVFSNAGGFQVAEGSTAKQDANGNWVNAIGLQSTASHRHVSKIWQDKCTPLADFVNVVKGEAPNKKDITKKESEIRLLDANTLIDGTPLNESGLNSLRMFTDIPSTMLNFLKEREYNDEMVKFVNGELDRRETEWNGKGKDARSFLVRTRQDDEGNDIIRAIVSERYGVIDNAEAMEIIANSLPSLDDALASHIFNNGDDIFGNIL
Ga0207909_10033675	F002398	GGA	MIALISIFLLTSVDQIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNVIEKSKFDFFAYLDTIGIEHSKVGSYYFFQRKPK