Scaffold Ga0207909_1003145

Overview

Basic Information

• Taxon OID: 3300020572
• Scaffold ID: Ga0207909_1003145
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3908
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F024551	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207909_10031453	F000957	GGAGG	MSSFRHLDGMVALLSEIYEINERILTGDICSNKTAIASGRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGIQYSYELADGFEVAGSQVPRRV
Ga0207909_10031454	F024551	N/A	MTIIKPDSLPRLWWLFPWSMARQLHRNCNALRALADKTDDENRLLRQEVTRLSHSREHWIAKHDRAYAVAMHNERVILEMEERRK
Ga0207909_10031456	F003714	N/A	MPNANHPYTETLTFAGRVIPLKRPMAEFAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRTWLDLTNTQWVNLNRRGPYRRQK