Scaffold Ga0207909

Basic Information
Taxon OID	3300020572 Open in IMG/M
Scaffold ID	Ga0207909_1001404 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6505
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F008494	Metagenome / Metatranscriptome	332	N
F008552	Metagenome	331	Y
F009750	Metagenome	313	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

470

Metagenome / Metatranscriptome

332

Metagenome

331

Metagenome

313

Protein ID	Family	RBS	Sequence
Ga0207909_10014042	F003750	N/A	MNEEILHRLMQVAIYSGGIVAFWQITKHMPKALYTLLECITVMTFSVLLLTPFSMIIEYILGGNIDTTMMFVGCLATVSLLSTMWMVMVQSSRELQGKKQYQYVVL
Ga0207909_10014045	F008494	AGAAG	MFMNAVGQYTTAIDKTADLNINYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIIAKREAEYQLETARANESRIKAEVDQIKYIIRALEVKEEA
Ga0207909_10014046	F009750	N/A	MIPKNAIFEPSNTMKEIVTAIYQNGVFKDNKILKPHLTDRIGIRMKFPEGAECILWTNGKKYYAVCEAFGTIFTINIPRNIGDDIWDKFKTHYEGNYFYQPF
Ga0207909_10014049	F008552	N/A	MNVMIISFEASANIDTTLFGYFSMQYDQEFFSDIRENLTEISKDDTLSFKLDPEEVKLLQGSYENVKRVISISDVEQNKFTNVFKRKFDTSGFKKFKNVNLHIDKDYFYFTGHHENKDGTKPVEFQSLNFDVRFIESLENKFKSMVN

Protein ID

Family

RBS

Sequence

Ga0207909_10014042

N/A

MNEEILHRLMQVAIYSGGIVAFWQITKHMPKALYTLLECITVMTFSVLLLTPFSMIIEYILGGNIDTTMMFVGCLATVSLLSTMWMVMVQSSRELQGKKQYQYVVL

Ga0207909_10014045

AGAAG

MFMNAVGQYTTAIDKTADLNINYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIIAKREAEYQLETARANESRIKAEVDQIKYIIRALEVKEEA

Ga0207909_10014046

N/A

MIPKNAIFEPSNTMKEIVTAIYQNGVFKDNKILKPHLTDRIGIRMKFPEGAECILWTNGKKYYAVCEAFGTIFTINIPRNIGDDIWDKFKTHYEGNYFYQPF

Ga0207909_10014049

N/A

MNVMIISFEASANIDTTLFGYFSMQYDQEFFSDIRENLTEISKDDTLSFKLDPEEVKLLQGSYENVKRVISISDVEQNKFTNVFKRKFDTSGFKKFKNVNLHIDKDYFYFTGHHENKDGTKPVEFQSLNFDVRFIESLENKFKSMVN

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