Scaffold Ga0207909_1001050

Overview

Basic Information

• Taxon OID: 3300020572
• Scaffold ID: Ga0207909_1001050
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7813
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015601	Metagenome / Metatranscriptome	253	Y
F054039	Metagenome / Metatranscriptome	140	N
F065787	Metagenome / Metatranscriptome	127	Y
F066790	Metagenome / Metatranscriptome	126	N
F080054	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207909_100105011	F015601	GGAG	MAGYTKEFLVDAFMSRYVNCDHLSIEKLERLEKMAHDLYDRVGRDQFRVYACLDAEAIREYKTQVTA
Ga0207909_100105018	F066790	AGCAGG	LLKMLSNLMQRVRDMFKPYTLEDFIVDADPKDYKDIQRLESVWHNYQERKLFNNCY
Ga0207909_10010502	F065787	N/A	MRKLEYYEIRETCKLIEYDLKLAGKGKLWVEVYRDEKYEYRALFPDVADWSAVPMTILTHPIHETQTDLS
Ga0207909_10010506	F080054	GGAG	MSTQPNYTAELEALILDVLLPVYEQHCRQRGIASLRSEINPELLKQLRKKKTVPRLFMPKTNI
Ga0207909_10010508	F054039	GAG	MIDISPNYKRLAKILNKTRKSLTQTCHDLGIDVDDIEDHVLVQVIDQCSHCNIWSQQLIKDLDHNPVCPVCVRLTGL