Scaffold Ga0207909_1000850

Overview

Basic Information

• Taxon OID: 3300020572
• Scaffold ID: Ga0207909_1000850
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9048
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040597	Metagenome / Metatranscriptome	161	Y
F087184	Metagenome / Metatranscriptome	110	N
F093301	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207909_100085016	F040597	N/A	MKKNEAAGIWEIRDARTGERISKFRARKRADVTRYLEMARIGLKRPIEDFEAVFITEWE
Ga0207909_10008503	F093301	AGGA	LPSAWIGVLPGEEPMTTLVAIQGDGWSVIGCDSRSSDESGRYLEMATHKVVENNGILIAGSGAGRGSNILQFGWRAPRPKAGQDLDVFMTKVFIPSMRKVFIESGYDMKADGEAAAHDSEFIVSIHGVLYPVYEDYSWDREERNVYHSGSGSDLALGVLEALNYQKCKTAKEAEKIVYRAVEIAIKHDIYSGGNVHTFIQEE
Ga0207909_10008504	F087184	AGGA	MNIGELTSEIESGTFDSDLIKIKEAVDARLKASRTSRTLADFNIGDTVVFNDLTATRYMVGQKATVTGMKQKKVTVRLETPVGRFAHINPVTGRVESSNITVPVAIIDLVK