Scaffold Ga0207909

Basic Information
Taxon OID	3300020572 Open in IMG/M
Scaffold ID	Ga0207909_1000461 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020572 Open in IMG/M

Scaffold ID

Ga0207909_1000461 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13697
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (89.74%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13697

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (89.74%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002935	Metagenome	519	Y
F007691	Metagenome / Metatranscriptome	346	Y
F011487	Metagenome / Metatranscriptome	290	Y
F015600	Metagenome / Metatranscriptome	253	Y
F017133	Metagenome / Metatranscriptome	242	Y
F020910	Metagenome / Metatranscriptome	221	Y
F023106	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207909_100046111	F007691	AGGA	MTKTMNTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIAHYAGIEVG
Ga0207909_100046112	F002935	AGGA	MRERSKGYIGQIVDGKKLAIIANDIYRLQYSNDFSPCTVDNLLFVTLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKECLTDQTEDIADYIRVFGDRLDNNCSLWQSKMSVLEDTIVV
Ga0207909_100046119	F011487	AGGAG	MGNIADEFYDEYYATTCPECKENAVDAYEEKCTHCLLEEMTMDYNEDIALEMSLGLDY
Ga0207909_10004613	F023106	GGA	MRISRRITDEEKVANKMGNIISDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYAQNGF
Ga0207909_100046134	F017133	GGA	MSIWTKFATVNDYPKGMMNLCPCGQVVLAPALYHEGQPYWENPNKCKELFEGVNK
Ga0207909_10004617	F015600	GAGG	MMNTTLDPRLQKLIDMGESGTDILHGELKNLMLEAENDYIEIEKEEREGGYSDAMLSMDRTRAEGRMDALVEVYALTYQLAFAISDRIKSRG
Ga0207909_10004619	F020910	AGAAGG	MWSRYTFVCDPDECDSLVEFTARDGFGFPLGVVEMFCPCGRKLNYISYEEAYAPIITDVSKVTPRTVVKIDSNPYN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207909_1000461

Overview

Ecosystem & Geography

Associated Families

Sequences