Scaffold Ga0207909_1000136

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207909_1000136

Scaffold Ga0207909_1000136

Overview

Basic Information
Taxon OID	3300020572 Open in IMG/M
Scaffold ID	Ga0207909_1000136 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	28384
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (63.41%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030432	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207909_100013619	F030432	N/A	MNNTPFPITPLQDNKFMLSWPRWQNIKHFHTKKKLLDVLFDDIGSEEVGISISIVKDELDIMWISWYAWAQDVNGDYATYLEDMYEIKGVAFNSENEALKLQDYLEKKYIWKTLQL

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