NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208723_1021296

Scaffold Ga0208723_1021296


Overview

Basic Information
Taxon OID3300020571 Open in IMG/M
Scaffold IDGa0208723_1021296 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1004
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001970Metagenome / Metatranscriptome609Y
F105023Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208723_10212961F105023N/AQNKAGRGKKGDGGKGKAPVKVSYKEELCEIFTINHRQQLKQDLIKFIQQEFQKDNLKSLHTGLSITDYKPEDWYEKIADNILNRLLQYFDIIRGQTERNLVSSIPLSKN
Ga0208723_10212962F001970N/AMKKFFTLTIFALLLAGCTTKIVPGQQVSTAQDAVAKQEKKIDQTYDDLVKNDKHKRVQTSVLAQGIQYSLQQVTNAPIQVETAKNLNERVISIVGSPHLDEIKRIKATIDLLNSSLAEERKKGEELLGQRDTVIDKLQKEKSELKDKYDDQLWQMTDKAKEVAKESDAKQATIDSMSGMFGLNAVFWGLKKFFFSCLTAIIIFVVVFALL

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