Scaffold Ga0208723_1012501

Overview

Basic Information

• Taxon OID: 3300020571
• Scaffold ID: Ga0208723_1012501
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1416
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022886	Metagenome / Metatranscriptome	212	N
F030763	Metagenome / Metatranscriptome	184	N
F036239	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208723_10125011	F030763	N/A	MLVIKNYKKIKNKYFGDWQVGKVEELPECYAMQVWSSIEKKSVTLAILRQPMMDEAEYDTAYRISLVEDNKIPSNIIDDVIYHSVLEDMELFGESLTHYLNTL
Ga0208723_10125012	F022886	GGA	MITIKNWDKLTRLFRSQIDIGELELYYEIIYYYPTLPSNEYYRITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELEDVDKVYEAIVDVVVRHNIKVKV
Ga0208723_10125014	F036239	N/A	KGWEKISGFTYKGYCIVNPIHDANEEGYFATVLNLNQVYRPKWDITLSAYAVKGVVTFSILDNVTQHLLAKSHLTKTNIDTLQKFREQYEMLVDDILEEAQSYVKKATTNINGGTTGIINQVQSSGSNVLYGSGSSNPFTQAHIIQTLQTLQQQIDDYNKKL