Scaffold Ga0208723_1009981

Overview

Basic Information

• Taxon OID: 3300020571
• Scaffold ID: Ga0208723_1009981
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1636
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043935	Metagenome	155	Y
F060914	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208723_10099812	F043935	AGAAG	MTKKEIEIFDDQIQYLCNHYQDRIKIMRQTLGINTDFTFMREVETIESLYKSLLELRKKEKGTYFSCGTSGWHIIYLRNKKTYKDGEKFVIKIYFSFVEADTYE
Ga0208723_10099814	F060914	N/A	FIYDTCDIISHVISRIQMKRLIKVRSDISSSIFPIELYQVDDYFTAEENGVELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDINELKVQGIL