Scaffold Ga0208723_1002721

Overview

Basic Information

• Taxon OID: 3300020571
• Scaffold ID: Ga0208723_1002721
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3628
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010831	Metagenome / Metatranscriptome	298	N
F099189	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208723_10027215	F010831	AGAAG	LYIQLKDDKVKQSFKPDVWTPMVLNGKDAIDPTSEGNCFWEAQLHLTLPKTGRPTYVKMNYSRDYKGKNDTTGTNTYAVPADVTSVQFTLSWFFKAKPGTPISCMVYHNGKSAIVSEIRQFKGMIL
Ga0208723_10027217	F099189	N/A	MVANPSYSDDLTINLDSTTPYVDVPFTVTEPVDANISTVTGTPNDVGFIDSWIELWQDATRIAFNDDGAHSGQNVLASLITIPLTVGEYFIRATSYAYICCNSYPTGSYLLSTNLTVNMPSPSPTVT