Scaffold Ga0208723_1002454

Overview

Basic Information

• Taxon OID: 3300020571
• Scaffold ID: Ga0208723_1002454
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3871
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F060908	Metagenome / Metatranscriptome	132	Y
F093349	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208723_100245411	F060908	N/A	MTRKLDYTVSKTISTSEKISTQTKNRIHIPKKYASYIGLNKGFVAHITNLNGAYIITVCPTPESKKFMVDKDGAVRFNVEKNNYKIMIADNTVVIV
Ga0208723_10024543	F093349	N/A	MEIFEALLLMADIKKSAHNKNHSLENFTVDSQVKFSSKCKICKKTVTVDMEAELPVSGEVLFIDCQKPERKKKIQISS
Ga0208723_10024546	F001561	N/A	MKRKQKMQTREQKIKLLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMVWLMWSMAINKKDTVWLFQAEKFAKRYLSLNPNGYRAYEYVGQFYRIMMVDERLAIRYYESALRWKDAPETTFHSLTSLYIKNGDKIRAIGNCRFNLTRFPNDPYAQSKLKELTK