NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208723_1001613

Scaffold Ga0208723_1001613


Overview

Basic Information
Taxon OID3300020571 Open in IMG/M
Scaffold IDGa0208723_1001613 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5028
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067392Metagenome125N
F093228Metagenome106Y
F094889Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0208723_10016131F093228GAGMEPVKLANPENAFEGGVLDKKWMFNVVGHLNLWHAGEVKLPSSEWGSGKILVSNTGWVVDLTRLKVPASSQVQSQREFQIVAFGANTVKIYNGTLFGELPDDFAVNNSPMFTLTVANNDKIYAAITWDRRVKANGDIVSTITSRTIEAAATVPTNDELTATRYYELATITLGTGNIPIVAQSRWGPIDDLPGTAAYNYWMPPDYGVTTAQTDYYDLRVTGKGVDNVGTNLAPTYDSIQMNNTGFVRIKK
Ga0208723_10016132F067392N/AMVGTLSSVTFDGPGRFVRPFQDKGDTQSFEWHIDCYQLAANFTPFQNARYYSTGFVSPVENMQYVTTSLGVAYLVHEEQPEYTACKGWLKFKRVYASLPITRQEGTSVVHSFQFYSTQPGYDWTEPPPAPEVAEWPLVCSGYYLYEYFLSYWPEPLRAPKITSLFGFLLMTNIPPNTGTFVSKDSEISIYKGSIIERKTLYVNTPTIAELSA
Ga0208723_10016134F094889AGGVSDATLDDHADALDSERKDRAVAMLGLPELIAGVQVEPLTPRRLEWLRAMGNPFVCGGDCPIAAIPDFLWYITKDFAFGDDERRKAFLAAILDLDVDEAREGIDEYLDRAFLDAGPGREGVSFYGSTAGLYCSLNTAYPGAGWHLERVLDTPLRVLYQIIKAADDSRGCSMQNRRSSPLISKFLSEIEHFELSIVKDFDAEMDAFVDAKCAEGYKLCSEPIQKINLAIPAACQQDAPWIVPMRKVN

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