Scaffold Ga0208723_1001613

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208723_1001613

Scaffold Ga0208723_1001613

Overview

Basic Information
Taxon OID	3300020571 Open in IMG/M
Scaffold ID	Ga0208723_1001613 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5028
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067392	Metagenome	125	N
F093228	Metagenome	106	Y
F094889	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208723_10016131	F093228	GAG	MEPVKLANPENAFEGGVLDKKWMFNVVGHLNLWHAGEVKLPSSEWGSGKILVSNTGWVVDLTRLKVPASSQVQSQREFQIVAFGANTVKIYNGTLFGELPDDFAVNNSPMFTLTVANNDKIYAAITWDRRVKANGDIVSTITSRTIEAAATVPTNDELTATRYYELATITLGTGNIPIVAQSRWGPIDDLPGTAAYNYWMPPDYGVTTAQTDYYDLRVTGKGVDNVGTNLAPTYDSIQMNNTGFVRIKK
Ga0208723_10016132	F067392	N/A	MVGTLSSVTFDGPGRFVRPFQDKGDTQSFEWHIDCYQLAANFTPFQNARYYSTGFVSPVENMQYVTTSLGVAYLVHEEQPEYTACKGWLKFKRVYASLPITRQEGTSVVHSFQFYSTQPGYDWTEPPPAPEVAEWPLVCSGYYLYEYFLSYWPEPLRAPKITSLFGFLLMTNIPPNTGTFVSKDSEISIYKGSIIERKTLYVNTPTIAELSA
Ga0208723_10016134	F094889	AGG	VSDATLDDHADALDSERKDRAVAMLGLPELIAGVQVEPLTPRRLEWLRAMGNPFVCGGDCPIAAIPDFLWYITKDFAFGDDERRKAFLAAILDLDVDEAREGIDEYLDRAFLDAGPGREGVSFYGSTAGLYCSLNTAYPGAGWHLERVLDTPLRVLYQIIKAADDSRGCSMQNRRSSPLISKFLSEIEHFELSIVKDFDAEMDAFVDAKCAEGYKLCSEPIQKINLAIPAACQQDAPWIVPMRKVN

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