NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208723_1001180

Scaffold Ga0208723_1001180


Overview

Basic Information
Taxon OID3300020571 Open in IMG/M
Scaffold IDGa0208723_1001180 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6275
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053078Metagenome141N
F091586Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208723_10011805F053078GGAMMRLDSLLSWFRDHQDSLPLVIHRHNLMDDGGVPAWTGDFATYLDHAAHATFAETEERKVHDGTAAEQATLLRVTIQRYKYPMHSALHTLKRCRAKQGEPKPHEIGVALIATRGNLTASQEWMMRKYPLMLHREIWLEAAERTLRLLHERYTETPRAIVRGKSDSQLNAEVTNAQASDQA
Ga0208723_10011806F091586GGAGGVIQVRSVNGAHLKRILSVNFPRLYAVAIPQMARALGISKRTLYAYIQEERRVPEYVEERIINLYGEIPENGWRTVEARGLHTITPTEDPNAPEAQALDLTVSADANWVEIAQASVMAVATKLHGHAMGEWVGHPDMLDVDGNPLDLVTECRRCGMLVAIDAGLREVNGFAWRAFCGSDNLWKGAR

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