Scaffold Ga0208723_1001180

Overview

Basic Information

• Taxon OID: 3300020571
• Scaffold ID: Ga0208723_1001180
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6275
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053078	Metagenome	141	N
F091586	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208723_10011805	F053078	GGA	MMRLDSLLSWFRDHQDSLPLVIHRHNLMDDGGVPAWTGDFATYLDHAAHATFAETEERKVHDGTAAEQATLLRVTIQRYKYPMHSALHTLKRCRAKQGEPKPHEIGVALIATRGNLTASQEWMMRKYPLMLHREIWLEAAERTLRLLHERYTETPRAIVRGKSDSQLNAEVTNAQASDQA
Ga0208723_10011806	F091586	GGAGG	VIQVRSVNGAHLKRILSVNFPRLYAVAIPQMARALGISKRTLYAYIQEERRVPEYVEERIINLYGEIPENGWRTVEARGLHTITPTEDPNAPEAQALDLTVSADANWVEIAQASVMAVATKLHGHAMGEWVGHPDMLDVDGNPLDLVTECRRCGMLVAIDAGLREVNGFAWRAFCGSDNLWKGAR