Scaffold Ga0208465_1022335

Overview

Basic Information

• Taxon OID: 3300020570
• Scaffold ID: Ga0208465_1022335
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 830
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005745	Metagenome / Metatranscriptome	391	Y
F050227	Metagenome / Metatranscriptome	145	Y
F083783	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208465_10223351	F050227	N/A	FLNGEMTAQFDYESKCRDCDAEDQMDYCENDCGEICGSCHWLGEADLECVAECDEHKIYLDDEHVPDYRKVEA
Ga0208465_10223352	F083783	AGG	MESEYINRKKQVVTYLELHAMSLNQDLEELSKRMDELDPASKDFAELDIEYNFTSGQVSATLHILEYVDGVL
Ga0208465_10223353	F005745	GGAG	MQPITTELEPHLQKQVDFGSSGLDIIHGHLKVLMLDAERELEEAQHIEEENDYSDAMESMERKYWEGQCDALGHLYELTYQLSFAIAGREEKNG