Scaffold Ga0208465_1004455

Overview

Basic Information

• Taxon OID: 3300020570
• Scaffold ID: Ga0208465_1004455
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2290
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F002060	Metagenome / Metatranscriptome	597	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208465_10044555	F002060	N/A	MEINYVTVVLSLLAAILSGMGTAIIAGLRDSKKEKIRREEREKDHLKLEIKDLKLDLYKLEKELTEWKDKYYNAIQELIGLKAELENALTQLNHIEMHEDLDSEFYK
Ga0208465_10044558	F000473	AGCAG	MASNLQNNHHFKHGVNLWTGEPNKPVFYNEEMRKRLREMNKPLLLEMDVVKYPEFLALRLYEDNFIQFTGSKKEQVIDYVMRVKKMIESYGVRCELEGVPSARGIG