Scaffold Ga0208465_1002782

Overview

Basic Information

• Taxon OID: 3300020570
• Scaffold ID: Ga0208465_1002782
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3193
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F078660	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208465_100278210	F078660	GGA	MKPIRFYEVANNKGEIEWGGASERDAVTWFRRGLDRSIYVSVWDEENEDDFKLITDKIDVTKLVLATLTEGRG
Ga0208465_10027829	F002827	GGAGG	MSKPTAEYYEAKANLCRDLAIKGMVEGDPKKAGDNLLRMVNALNELNLINYKKGKEDEADSIL